Books

  • Colubri A. Processing for Android. Creating mobile, sensor-aware, and VR applications using Processing. Apress. Expected publication date: October 2017

Peer-reviewed journals and conferences

  • Guardo R, Colubri A, Dreidemie, C. Integrating spatial earthquake distribution and 3D modelling analysis in a customizable GIS for a new perspective in volcano preliminary imaging: the case study of Mt. Etna. Accepted to the 2017 Congress of the International Association of Volcanology and Chemistry of the Earth’s Interior.

  • Colubri A, Silver T, Fradet T, Retzepi K, Fry BW, Sabeti PC. Transforming clinical data into actionable Ebola prognosis models. PLOS Neglected Tropical Diseases. 10(3): e0004549. doi: 10.1371/journal.pntd.0004549

  • Gomez AF, Colubri A, Charalambos JP. Shader Programming for Computational Arts and Design - A Comparison between Creative Coding Frameworks. Proceedings of the 11th International Conference on Computer Graphics Theory and Application. 2016; 161-168. doi: 10.5220/0005678301610168

  • Gomez AF, Charalambos JP, Colubri A. ShaderBase: a Processing Tool for Shaders in Computational Arts and Design. Proceedings of the 7th International Conference on Information Visualization Theory and Applications. 2016; 189-194. doi: 10.5220/0005673201890194

  • Schieffelin J, Shaffer J, Goba A, Gbakie M, Gire S, Colubri A, et al. Clinical Illness and Outcomes in Patients with Ebola in Sierra Leone. The New England Journal of Medicine. 2014;371(22):2092-2100. doi: 10.1056/NEJMoa1411680

  • Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, Malboeuf CM, Qu J, Gladden AD, Schaffner SF, Yang X, Jiang XPP, Nekoui M, Colubri A, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345(6202):1369-72. doi: 10.1126/science.1259657

  • Colubri A, Fry B. Introducing Processing 2.0, Proceedings SIGGRAPH ‘12 ACM SIGGRAPH 2012 Talks. doi: 10.1145/2343045.2343061

  • Kim JH, Colubri A. ITCH: Individual Technology/Community Hacking. Proceedings of the International Symposium on Electronic Arts Ruhr 2010 conference. 2010; 281-3. pdf

  • DeBartolo J, Colubri A, Jha AK, Fitzgerald JE, Freed KF, Sosnick TR. Mimicking the folding pathway to improve homology-free protein structure prediction. Proceedings of the National Academy of Sciences. 2009;106(10):3734-9. doi: 10.1073/pnas.0811363106

  • Fitzgerald JE, Jha AK, Colubri A, Sosnick TR, Freed KF. Reduced Cβ statistical potentials can outperform all‐atom potentials in decoy identification. Protein science. 2007;16(10):2123-39. doi: 10.1110/ps.072939707

  • Colubri A, Jha AK, Shen M-y, Sali A, Berry RS, Sosnick TR, et al. Minimalist representations and the importance of nearest neighbor effects in protein folding simulations. Journal of molecular biology. 2006;363(4):835-57. doi: 10.1016/j.jmb.2006.08.035

  • Jha AK, Colubri A, Zaman MH, Koide S, Sosnick TR, Freed KF. Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library. Biochemistry. 2005;44(28):9691-702. doi: 10.1021/bi0474822

  • Jha AK, Colubri A, Freed KF, Sosnick TR. Statistical coil model of the unfolded state: resolving the reconciliation problem. Proceedings of the National Academy of Sciences. 2005;102(37):13099-104. doi: 10.1073/pnas.0506078102

  • Colubri A. Prediction of protein structure by simulating coarse-grained folding pathways: a preliminary report. Journal of Biomolecular Structure and Dynamics. 2004;21(5):625-38. doi: 10.1080/07391102.2004.10506953

  • Fernández A, Shen MY, Colubri A, Sosnick TR, Berry RS, Freed KF. Large-scale context in protein folding: villin headpiece. Biochemistry. 2003;42(3):664-71 Sosnick TR, Berry RS, Colubri A, Fernández A. Distinguishing foldable proteins from nonfolders: When and how do they differ? Proteins: Structure, Function, and Bioinformatics. 2002;49(1):15-23. doi: 10.1002/prot.10193

  • Fernández A, Sosnick TR, Colubri A. Dynamics of hydrogen bond desolvation in protein folding. Journal of molecular biology. 2002;321(4):659-75. doi: 10.1016/S0022-2836(02)00679-4

For a complete list of publications, please check my Google Scholar profile.